Westlake Imputation Server
Genotype Imputation (Minimac4)
This is the new Westlake Imputation Server Pipeline using Minimac4.
If your input data is GRCh37/hg19 please ensure chromosomes are encoded without prefix (e.g. 20).
If your input data is GRCh38/hg38 please ensure chromosomes are encoded with prefix 'chr' (e.g. chr20).
Project Name
Project Name
Upload Files
VCFv4.2
File Example In GRCh37
Upload Files (vcf.gz)
Genotype Imputation
Phase
No Phase
Phasing by EAS
Phasing by SAS
Phasing by EUR
Phasing by AFR
Phasing by ALL 1000G
Phasing by Self (input dataset)
Reference Panel
1000G Phase3 v5
WBBC
WBBC Combined 1000G
WBBC Combined EAS
Array Build
GRCh37
GRCh38
Submit